The Bosch dual-battery system makes it a pain to just charge to 80 percent since it apparently completely charges one battery before starting on the next. I'd gladly pay extra (if anyone at Bosch is listening) for an "eco-charger" which would only charge the batteries to 80 percent, especially for day-to-day use when not on journey.
Are you 100% sure that it charges the batteries in order, first one to 100% and only then begins on the second one? This is not what I've heard from other sources and would be inconsistent with the usage behaviour, where it draws 5% from one battery before switching over to the other one.
I did some measurements of the charging process of a dual battery bike, it didn't begin from fully depleted batteries, I guess it was about 30-40% remaining (I have the Intuvia, so no exact readings are possible).
You can see, beginning at around 19.00, it slowly ramps up the charging current (measured in watts here, in a 230 V system) to reach its maximum of 193 W around 22.40 when it suddenly drops to 156 W and then quickly drops to 0 W.
Since there is only one curve ramping up and falling down, not two identical following each other, it also indicates it charges both at the same time (or, 5% into the first, and then 5% into the second, and so on) rather than charging the first to 100%.
I am convinced the last plateau of ~ 150 W is the "last 5-10%" trickle charging which we would like to avoid for most of the time. I plan automating this on my home automation platform, so when the charging current drops to that plateau the charger will be switched off.
About once every other hour it seems to momentarily top up the batteries for minute or two.