What do you mean? Is it bad to charge the battery all the way up to full?
Buy the biggest battery you can afford, as ideally (arguably) you want to be operating lithium batteries within a charged range of 20-80%
Have a read of the below extracts from Grin Technolgies
http://www.ebikes.ca/product-info/battery-kits.html
The Case for Extra Capacity
Say you have a 12km trip to work and back, so to do the full 24km round trip you'll need 240 watt-hours. A 36V 8Ah batery at 288 watt-hours should be a perfect choice no?
The answer is that, unless you are seriously budget or weight constrained, this would probably be a bad battery investment. It might fit the bill initially for your commuting needs, but then it doesn't really leave any reserve if you need to run some errands on the way home, or forget to charge it up one night etc. Even worse, as the battery ages over time the capacity drops. After a year your 8Ah battery is now only 7Ah, it's only barely able to do your daily commute, and the next year when it is just 6Ah you now need to carry the charger with you and top it up at work every day.
Most people find that once they have an ebike, they use it for all kinds of applications and trips outide of just commuting, and the ability to go 50+ km on a charge opens up possibilities that wouldn't have been possible otherwise. Plus, as the battery ages and declines in capacity, it still has more than enough range for your key commuting needs. Imagine if instead of getting an 8Ah pack, you purchased a 15Ah battery. Even if after 4-5 years it has lost 30% of its original capacity, that's still over 10Ah and leaves plenty of reserve for your 24km commute.
Furthermore, if you have more capacity than required, then you also have the opportunity to do
partial charging of the battery with a Satiator or similar device, so that instead of charging the pack to 100% to squeeze out every km, your standard charge is set to a lower 80 or 90% level. This can have a pronounced effect increasing both the cycle life and calendar life of a lithium battery by several fold.
And a final point is that a larger battery has a lower per cell stress during discharge, since the current is shared among more parallel cells. Cells that are cycled at high discharge curents (>1-2C) also exhibit lower cycle life than those cycled at low currents