Hello!
What you are experiencing is normal.
The Gen3 Drive Units have a different design than the Gen4 Drive Units. Gen4 has a ratchet mechanism that allows free, forward motion of the chain ring even when the cranks are not moving. This is similar to Gen2 Drive Units. Gen3 uses a one-way bearing between motor gearing and output, but the chainring mount and crank spindle are essentially attached to each other (no ratchet mech.) The chainring mount and the crank spindle interface with each other via splined surfaces, designed for just a tiny amount of "play" or "give." This is where Gen3 measures rider's torque input.
Due to this design, if you stop pedaling abruptly, you will feel a slight clunk. The amount of clunk you feel varies depending on individual rider's pedaling behavior- Some riders stop pedaling very abruptly and tend to "lock" their leg with a pedal down in the "6:00 position," other riders do more of a "soft stop," and let the pedaling sort of spin out over the course however many degrees of rotation.
I hope this helps!